#MASS EFFECT FILTERING MODE MANUAL#
#MASS EFFECT FILTERING MODE SOFTWARE#

Machine learning techniques (at this time called Artificial Intelligence), heuristic rules and other chemometrical methods were combined to investigate nuclear magnetic resonance (NMR) and mass spectrometry (MS) data in order to find the correct structure of unknown chemicals in shorter time than manual investigation of all spectral data. The famous Dendral project was one of the first concerted actions for structure elucidation approaches using computers which led to the term CASE (Computer-Assisted Structure Elucidation). Pioneers of structure elucidation around Carl Djerassi or natural product researchers like Satoshi Omura or Victor Wray often used additional analytical techniques like nuclear magnetic resonance, Fourier-transform infrared spectroscopy, ultraviolet spectroscopy or crystallographic data for initial proposition of structures of natural products which were subsequently confirmed by organic synthesis. Since more than 50 years mass spectrometric techniques are utilized to identify unknown compounds.

#MASS EFFECT FILTERING MODE SOFTWARE#

Corresponding software and supplemental data are available for downloads from the authors' website.ДЎ.1 Structure elucidation utilizes NMR and MS For truly novel compounds that are not present in databases, the correct formula is found in the first three hits with a probability of 65вЂ“81%. The correct molecular formula is assigned with a probability of 98% if the formula exists in a compound database. The seven rules enable an automatic exclusion of molecular formulas which are either wrong or which contain unlikely high or low number of elements. In each case, the correct formula was ranked as top hit when combining the seven rules with database queries. Last, some exemplary compounds were analyzed by Fourier transform ion cyclotron resonance mass spectrometry and by gas chromatography-time of flight mass spectrometry. The correct formulas were retrieved as top hit at 80вЂ“99% probability when assuming data acquisition with complete resolution of unique compounds and 5% absolute isotope ratio deviation and 3 ppm mass accuracy. Thirdly 6,000 pharmaceutical, toxic and natural compounds were selected from DrugBank, TSCA and DNP databases. Next, the rules were shown to effectively reducing the complement all eight billion theoretically possible C, H, N, S, O, P-formulas up to 2000 Da to only 623 million most probable elemental compositions. Only 0.6% of these compounds did not pass all rules. First, 432,968 formulas covering five million PubChem database entries were checked for consistency. The seven rules were developed on 68,237 existing molecular formulas and were validated in four experiments. Formulas are ranked according to their isotopic patterns and subsequently constrained by presence in public chemical databases. ResultsДЄn algorithm for filtering molecular formulas is derived from seven heuristic rules: (1) restrictions for the number of elements, (2) LEWIS and SENIOR chemical rules, (3) isotopic patterns, (4) hydrogen/carbon ratios, (5) element ratio of nitrogen, oxygen, phosphor, and sulphur versus carbon, (6) element ratio probabilities and (7) presence of trimethylsilylated compounds. In order to automatically constrain the thousands of possible candidate structures, rules need to be developed to select the most likely and chemically correct molecular formulas. The first crucial step is to obtain correct elemental compositions. Structure elucidation of unknown small molecules by mass spectrometry is a challenge despite advances in instrumentation.

Mass effect filtering mode